Stem-loop sequence crm-mir-40

Accession MI0011020
Description Caenorhabditis remanei miR-40 stem-loop
Gene family MIPF0000096; mir-36
Stem-loop 
    -cu       a            u    g a      -----  -  gc 
aacc   gcccgua ccuaguugaugu cauc c gugaua     ug ac  a
||||   ||||||| |||||||||||| |||| | ||||||     || ||   
uugg   ugggcgu ggaucgacuaca gugg g cacuau     ac ug  u
    acu       g            u    - c      uccuu  a  ac
Get sequence
Genome context
Coordinates (WS200) Overlapping transcripts
Crem_Contig1: 1740683-1740782 [-]
intergenic
Clustered miRNAs
< 10kb from crm-mir-40
crm-mir-38 Crem_Contig1: 1740947-1741066 [-]
crm-mir-39 Crem_Contig1: 1740785-1740878 [-]
crm-mir-40 Crem_Contig1: 1740683-1740782 [-]
crm-mir-41 Crem_Contig1: 1740555-1740672 [-]

Mature sequence crm-miR-40

Accession MIMAT0011505
Sequence

63 -  

ucaccggguguacaucagcuag

 - 84

Get sequence
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).