Stem-loop crm-mir-40

Accession

MI0011020

Description

Caenorhabditis remanei crm-mir-40 precursor miRNA

Gene family

MIPF0000096; mir-36

Sequence

aacccugcccguaaccuaguugauguucaucgcagugauaugacgcaucaguacauuccuuaUCACCGGGUGUACAUCAGCUAGggugcggguucagguu
...(((((((((..((((((((((((.((((.(.((((((((((......)).)).....)))))).))))).))))))))))))..)))))..))))..

Structure

aac    --     aa            u    g a      -----  -  gc 
   ccug  cccgu  ccuaguugaugu cauc c gugaua     ug ac  a
   ||||  |||||  |||||||||||| |||| | ||||||     || ||   
   ggac  gggcg  gGAUCGACUACA GUGG G CACUau     ac ug  u
-uu    uu     ug            U    - C      uccuu  a  ac 

Annotation confidence Not enough data

Genome context

Crem_Contig1: 1740683-1740782 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from crm-mir-40

Mature crm-miR-40

• Accession: MIMAT0011505
• Description: Caenorhabditis remanei crm-miR-40 mature miRNA
• Sequence: 63 - UCACCGGGUGUACAUCAGCUAG - 84
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074