Stem-loop crm-mir-39

Accession

MI0011021

Description

Caenorhabditis remanei crm-mir-39 precursor miRNA

Gene family

MIPF0000304; mir-39

Sequence

ugagauccagagagcccaacuguuucuuuccccgguaauaaacuucaacacgacuaUCACCGGGUAUGAAUCAGUUAGgcucuucugguaucuu
.(((((((((((((((.(((((.(((....((((((.(((..(........)..))).))))))...))).))))).))))).))))).)))))

Structure

u     -     -     c     u   uuuc      a   aa uuc 
 gagau ccaga gagcc aacug uuc    cccggu aua  c   a
 ||||| ||||| ||||| ||||| |||    |||||| |||  |    
 uucua ggucu cucgG UUGAC AAG    GGGCCA Uau  g   a
-     u     u     A     U   -UAU      C   ca cac 

Annotation confidence Not enough data

Genome context

Crem_Contig1: 1740785-1740878 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from crm-mir-39

Mature crm-miR-39

• Accession: MIMAT0011506
• Description: Caenorhabditis remanei crm-miR-39 mature miRNA
• Sequence: 57 - UCACCGGGUAUGAAUCAGUUAG - 78
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074