miRBase entry: crm-mir-49

Stem-loop crm-mir-49


Accession
MI0011023
Description
Caenorhabditis remanei crm-mir-49 precursor miRNA
Gene family
MIPF0000237; mir-49


Sequence

guaaguuuagaacaaucuaccgauccgcaguuucuuaugaugugcuccgagccaacauguguucgAAGCACCACGAGAAGCUGCAGauggaggaguuuguuccauuuugc
(((((....((((((.((.((.(((.((((((((((.((..(((((.(((((((...)).))))).))))))).)))))))))).))).).).)).))))))...)))))

Structure
     uuua      u  a - g   c          a  au     c     -  a 
guaag    gaacaa cu c c auc gcaguuucuu ug  gugcu cgagc ca  
|||||    |||||| || | | ||| |||||||||| ||  ||||| ||||| || c
cguuu    cuuguu ga g g uaG CGUCGAAGAG AC  CACGA gcuug gu  
     -uac      u  g a g   A          C  --     A     u  a 


Annotation confidence Not enough data
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Genome context
Crem_Contig50: 190582-190691 [-]

Database links

Mature crm-miR-49

Accession MIMAT0011508
Description Caenorhabditis remanei crm-miR-49 mature miRNA
Sequence 66 - AAGCACCACGAGAAGCUGCAG - 86
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074