Stem-loop crm-mir-35a-1

Accession

MI0011025

Description

Caenorhabditis remanei crm-mir-35a-1 precursor miRNA

Gene family

MIPF0000096; mir-36

Sequence

gcuggcuuggaccuuugcugguuucccucgguuauauuucuaaaaaaacuaUCACCGGGUGAACAUUGGUGCagguccaauccgcc
((.((.((((((((.((((((((((.((((((.((((((......))).))).)))))).))).))))))).)))))))).)))).

Structure

-  u  c        u       -   c      u   -   cu 
 gc gg uuggaccu ugcuggu uuc cucggu aua uuu  a
 || || |||||||| ||||||| ||| |||||| ||| |||   
 cg cc aaccugga GUGGUUA AAG GGGCCA Uau aaa  a
c  -  u        C       C   U      C   c   aa 

Annotation confidence Not enough data

Genome context

Crem_Contig93: 221595-221680 [-]

Clustered miRNAs

15 other miRNAs are < 10 kb from crm-mir-35a-1

Mature crm-miR-35a

• Accession: MIMAT0011510
• Description: Caenorhabditis remanei crm-miR-35a mature miRNA
• Sequence: 52 - UCACCGGGUGAACAUUGGUGC - 72
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074