Stem-loop sequence crm-mir-35b

Accession MI0011026
Description Caenorhabditis remanei miR-35b stem-loop
Gene family MIPF0000096; mir-36
Stem-loop 
                 a ac       ug  u        uu   a 
ucggugggaucggaccu c  ugguuuu  cu cggugaua  uca g
||||||||||||||||| |  |||||||  || ||||||||  |||  
agccacucuagccugga g  acuaaaa  gg gccacuau  agu a
                 c ga       gu  -        -u   a
Get sequence
Deep sequencing
28 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
Crem_Contig93: 221703-221796 [-]
intergenic
Clustered miRNAs
< 10kb from crm-mir-35b
crm-mir-35c-2 Crem_Contig93: 223885-224001 [-]
crm-mir-35e-2 Crem_Contig93: 223699-223796 [-]
crm-mir-35d-2 Crem_Contig93: 223544-223635 [-]
crm-mir-35f Crem_Contig93: 223206-223319 [-]
crm-mir-35c-3 Crem_Contig93: 223069-223163 [-]
crm-mir-35e-1 Crem_Contig93: 222856-222943 [-]
crm-mir-35d-1 Crem_Contig93: 222710-222800 [-]
crm-mir-35g Crem_Contig93: 222433-222546 [-]
crm-mir-35c-1 Crem_Contig93: 222297-222390 [-]
crm-mir-35a-2 Crem_Contig93: 221979-222067 [-]
crm-mir-35b Crem_Contig93: 221703-221796 [-]
crm-mir-35a-1 Crem_Contig93: 221595-221680 [-]

Mature sequence crm-miR-35b

Accession MIMAT0011511
Sequence

57 -  

ucaccgggugaaaaucaaggc

 - 77

Get sequence
Deep sequencing 28 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).