miRBase entry: crm-mir-35c-1

Stem-loop crm-mir-35c-1

Accession

MI0011027

Description

Caenorhabditis remanei crm-mir-35c-1 precursor miRNA

Gene family

MIPF0000096; mir-36

Sequence

ucggucggaucggaccuacacugguuuucgcugcggugauacuucgagaaugauuaUCACCGGGUGAAAAUCAGGGCagguccgauuccaccga
(((((.(((((((((((.(.((((((((((((.((((((((..((......)).)))))))))))))))))))).).))))))))))).)))))

Structure

     c           a a            g        cu  ga 
ucggu ggaucggaccu c cugguuuucgcu cggugaua  uc  g
||||| ||||||||||| | |||||||||||| ||||||||  ||   
agcca cuuagccugga G GACUAAAAGUGG GCCACUau  ag  a
     c           C G            -        -u  ua

Annotation confidence Not enough data

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Genome context

Crem_Contig93: 222297-222390 [-]

Clustered miRNAs

15 other miRNAs are < 10 kb from crm-mir-35c-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature crm-miR-35c-3p

Accession	MIMAT0011512
Description	Caenorhabditis remanei crm-miR-35c-3p mature miRNA
Sequence	57 - UCACCGGGUGAAAAUCAGGGC - 77
Evidence	experimental 454 [1]

References

PubMed ID: 19755563
Repertoire and evolution of miRNA genes in four divergent nematode species
"de Wit E, Linsen SE, Cuppen E, Berezikov E"
"Genome Res (2009) 19:2064-2074