Stem-loop crm-mir-35d-1

Accession

MI0011028

Description

Caenorhabditis remanei crm-mir-35d-1 precursor miRNA

Gene family

MIPF0000096; mir-36

Sequence

aggucggaucggcccuccacugguuuucgccucggucauauuucaaguaugauuaUCACCGGGUGAAAAUCAGAGCagggccgauuccacc
.(((.(((((((((((.(.((((((((((((.((((.(((..(((....))).))).)))))))))))))))).).))))))))))).)))

Structure

a   c           c a            u    c   uu   a 
 ggu ggaucggcccu c cugguuuucgcc cggu aua  uca g
 ||| ||||||||||| | |||||||||||| |||| |||  |||  
 cca cuuagccggga G GACUAAAAGUGG GCCA Uau  agu u
-   c           C A            -    C   -u   a 

Annotation confidence Not enough data

Genome context

Crem_Contig93: 222710-222800 [-]

Clustered miRNAs

15 other miRNAs are < 10 kb from crm-mir-35d-1

Mature crm-miR-35d

• Accession: MIMAT0011739
• Description: Caenorhabditis remanei crm-miR-35d mature miRNA
• Sequence: 56 - UCACCGGGUGAAAAUCAGAGC - 76
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074