miRBase entry: crm-mir-35e-1

Stem-loop crm-mir-35e-1


Accession
MI0011029
Description
Caenorhabditis remanei crm-mir-35e-1 precursor miRNA
Gene family
MIPF0000096; mir-36


Sequence

augacgggaaccgugcugguuucgaacucgguaauagaccagaagaaagcuaUCACCGGGUGGAAACUGGUACGgguccccgagucgu
(((((((((.(((((((((((((..(((((((.((((............)))).))))))).))))))))))))).))))...)))))

Structure
     ---    a             ga       a    accag 
augac   ggga ccgugcugguuuc  acucggu auag     a
|||||   |||| |||||||||||||  ||||||| ||||      
ugcug   cccu gGCAUGGUCAAAG  UGGGCCA Uauc     a
     agc    g             -G       C    gaaag 


Annotation confidence Not enough data
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Genome context
Crem_Contig93: 222856-222943 [-]
Clustered miRNAs
15 other miRNAs are < 10 kb from crm-mir-35e-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature crm-miR-35e

Accession MIMAT0011513
Description Caenorhabditis remanei crm-miR-35e mature miRNA
Sequence 53 - UCACCGGGUGGAAACUGGUACG - 74
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074