Stem-loop sequence crm-mir-35f

Accession MI0011030
Description Caenorhabditis remanei miR-35f stem-loop
Gene family MIPF0000096; mir-36
Stem-loop 
  ug  ----cu    gac    a   u  ug     g    u   a    gacuaaa 
au  ca      ugac   ggga cag gc  augcc accu ggu auag       c
||  ||      ||||   |||| ||| ||  ||||| |||| ||| ||||       u
ua  gu      acug   cccu guc ug  uacgg uggg cca uauc       g
  gu  uauccu    auu    g   u  gu     g    -   c    gaacagu
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Genome context
Coordinates (WS200) Overlapping transcripts
Crem_Contig93: 223206-223319 [-]
intergenic
Clustered miRNAs
< 10kb from crm-mir-35f
crm-mir-35c-2 Crem_Contig93: 223885-224001 [-]
crm-mir-35e-2 Crem_Contig93: 223699-223796 [-]
crm-mir-35d-2 Crem_Contig93: 223544-223635 [-]
crm-mir-35f Crem_Contig93: 223206-223319 [-]
crm-mir-35c-3 Crem_Contig93: 223069-223163 [-]
crm-mir-35e-1 Crem_Contig93: 222856-222943 [-]
crm-mir-35d-1 Crem_Contig93: 222710-222800 [-]
crm-mir-35g Crem_Contig93: 222433-222546 [-]
crm-mir-35c-1 Crem_Contig93: 222297-222390 [-]
crm-mir-35a-2 Crem_Contig93: 221979-222067 [-]
crm-mir-35b Crem_Contig93: 221703-221796 [-]
crm-mir-35a-1 Crem_Contig93: 221595-221680 [-]

Mature sequence crm-miR-35f

Accession MIMAT0011514
Sequence

68 -  

ucaccgggugggcauugguucu

 - 89

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Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).