Stem-loop sequence crm-mir-249

Accession MI0011047
Description Caenorhabditis remanei miR-249 stem-loop
Gene family MIPF0000263; mir-249
Stem-loop 
u       acg             a        u    gc      uau 
 guuuucu   ugacuagcaacgc caaaaguu cugu  gacaaa   g
 |||||||   ||||||||||||| |||||||| ||||  ||||||    
 uagaaga   guugaucguugcg guuuucag gaca  cuguuu   a
-       -aa             a        -    --      uaa
Get sequence
Deep sequencing
5 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
Crem_Contig0: 4287076-4287170 [+]
intergenic
Clustered miRNAs
< 10kb from crm-mir-249
crm-mir-249 Crem_Contig0: 4287076-4287170 [+]
crm-mir-785 Crem_Contig0: 4287759-4287869 [-]

Mature sequence crm-miR-249

Accession MIMAT0011529
Sequence

59 -  

ucacaggacuuuugagcguugc

 - 80

Get sequence
Deep sequencing 5 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).