Stem-loop sequence crm-mir-42

Accession MI0011050
Description Caenorhabditis remanei miR-42 stem-loop
Gene family MIPF0000233; mir-42
Stem-loop 
c         uc                 uc  uuuu        ----uu    c 
 aaacccuug  ggaccuuuguggauguu  cu    cggugaag      guuc g
 |||||||||  |||||||||||||||||  ||    ||||||||      ||||  
 uuugggagc  ccuggagacaucuacaa  gg    gccacuuc      uaag u
-         -u                 uu  ----        uucuau    u
Get sequence
Deep sequencing
31 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
Crem_Contig1: 1324268-1324371 [+]
intergenic
Clustered miRNAs
< 10kb from crm-mir-42
crm-mir-45 Crem_Contig1: 1319070-1319178 [-]
crm-mir-42 Crem_Contig1: 1324268-1324371 [+]
crm-mir-43 Crem_Contig1: 1324406-1324505 [+]
crm-mir-44 Crem_Contig1: 1324559-1324656 [+]

Mature sequence crm-miR-42

Accession MIMAT0011532
Sequence

68 -  

ucaccggguuaacaucuacag

 - 88

Get sequence
Deep sequencing 31 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).