Stem-loop crm-mir-42

Accession

MI0011050

Description

Caenorhabditis remanei crm-mir-42 precursor miRNA

Gene family

MIPF0000233; mir-42

Sequence

caaacccuugucggaccuuuguggauguuuccuuuuucggugaaguuguuccguugaauuaucuucuUCACCGGGUUAACAUCUACAGagguccucgaggguuu
.(((((((((..(((((((((((((((((.((.....((((((((..((((....))))......))))))))))..))))))))))))))))).)))))))))

Structure

c         uc                 -u  uuuuu        ----uu    c 
 aaacccuug  ggaccuuuguggauguu  cc     cggugaag      guuc g
 |||||||||  |||||||||||||||||  ||     ||||||||      ||||  
 uuugggagc  ccuggaGACAUCUACAA  GG     GCCACUuc      uaag u
-         -u                 UU  -----        uucuau    u 

Annotation confidence Not enough data

Genome context

Crem_Contig1: 1324268-1324371 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from crm-mir-42

Mature crm-miR-42

• Accession: MIMAT0011532
• Description: Caenorhabditis remanei crm-miR-42 mature miRNA
• Sequence: 68 - UCACCGGGUUAACAUCUACAG - 88
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074