Stem-loop sequence crm-mir-239b

Accession MI0011054
Description Caenorhabditis remanei miR-239b stem-loop
Gene family MIPF0000135; mir-239
Stem-loop 
-      ---ac    a          u c       cu    cu   cu 
 aagaca     uugc auuuuuguac g acaaaag  cuga  gcu  g
 ||||||     |||| |||||||||| | |||||||  ||||  |||  a
 uucugu     agcg uaaaaacgug c uguuuuc  gacu  cgg  u
u      cuaua    g          u -       ac    --   ua
Get sequence
Deep sequencing
41 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
Crem_Contig93: 352923-353018 [+]
intergenic
Clustered miRNAs
< 10kb from crm-mir-239b
crm-mir-239a Crem_Contig93: 351743-351835 [-]
crm-mir-239b Crem_Contig93: 352923-353018 [+]

Mature sequence crm-miR-239b

Accession MIMAT0011536
Sequence

17 -  

uuuguacugcacaaaagcucug

 - 38

Get sequence
Deep sequencing 40 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).