Stem-loop crm-mir-79

Accession

MI0011072

Description

Caenorhabditis remanei crm-mir-79 precursor miRNA

Gene family

MIPF0000014; mir-9

Sequence

gaauaucaaauagaaaguuuccgauCUUUGGUGAUUCAGCUUAAAUGauagacucaauauguuagacuucAUAAAGCUAGGUUACCAAAGCUcggcggccgaaucuaucuuuuuuuuucu
.........(((((..(((.((((.(((((((((((.(((((..((((..(((.......))).....)))).))))).))))))))))).)))).)))....)))))............

Structure

---gaauaucaa     --aa   u    u           C     AA    ---ua   uc 
            auaga    guu ccga CUUUGGUGAUU AGCUU  AUGa     gac  a
            |||||    ||| |||| ||||||||||| |||||  ||||     |||  a
            uaucu    cgg ggcU GAAACCAUUGG UCGAA  UAcu     uug  u
ucuuuuuuuuuc     aagc   c    C           A     -A    ucaga   ua 

Annotation confidence Not enough data

Genome context

Crem_Contig34: 372254-372373 [+]

Mature crm-miR-79-5p

• Accession: MIMAT0011555
• Description: Caenorhabditis remanei crm-miR-79-5p mature miRNA
• Sequence: 26 - CUUUGGUGAUUCAGCUUAAAUG - 47
• Evidence: experimental ; 454 [1]

Mature crm-miR-79-3p

• Accession: MIMAT0011556
• Description: Caenorhabditis remanei crm-miR-79-3p mature miRNA
• Sequence: 71 - AUAAAGCUAGGUUACCAAAGCU - 92
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074