Stem-loop crm-mir-235

Accession

MI0011073

Description

Caenorhabditis remanei crm-mir-235 precursor miRNA

Gene family

MIPF0000367; mir-235

Sequence

auggauacaaucugaaaaucaagaucAGGCCUUGGCCGAAUGCAUAUAUUgcucaguugaauugcuaaUAUUGCACUCGCCCCGGCCUGaucuaaaaguaagauuucau
........(((((........((((((((((..(((.((.((((.(((((((...........)).))))))))).)))))..)))))))))).......)))))....

Structure

auggauac     gaaaauca          UU   C  A    U     -  ucag 
        aaucu        agaucAGGCC  GGC GA UGCA AUAUU gc    u
        |||||        ||||||||||  ||| || |||| ||||| ||    u
        uuaga        ucuaGUCCGG  CCG CU ACGU UAUaa cg    g
----uacu     -augaaaa          CC   -  C    -     u  uuaa 

Annotation confidence Not enough data

Genome context

Crem_Contig4: 747854-747962 [+]

Mature crm-miR-235-5p

• Accession: MIMAT0011557
• Description: Caenorhabditis remanei crm-miR-235-5p mature miRNA
• Sequence: 27 - AGGCCUUGGCCGAAUGCAUAUAUU - 50
• Evidence: experimental ; 454 [1]

Mature crm-miR-235-3p

• Accession: MIMAT0011558
• Description: Caenorhabditis remanei crm-miR-235-3p mature miRNA
• Sequence: 69 - UAUUGCACUCGCCCCGGCCUG - 89
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074