miRBase entry: crm-mir-81

Stem-loop crm-mir-81


Accession
MI0011079
Description
Caenorhabditis remanei crm-mir-81 precursor miRNA
Gene family
MIPF0000154; mir-81


Sequence

ccucguggccagcaguCGGUUUUCACCUUGAUCUGAGagcuaaacauaaugcuuaucUGAGAUCAUCGUGAAAGCUAGUugcagguacacaggc
(((.((((((.((((..(((((((((..((((((.(((((..........))...))).))))))..)))))))))..)))).))).)))))).

Structure
-   c   -   a    uC         CU      G   ---  uaaa 
 ccu gug gcc gcag  GGUUUUCAC  UGAUCU AGa   gc    c
 ||| ||| ||| ||||  |||||||||  |||||| |||   ||     
 gga cac ugg cguU  UCGAAAGUG  ACUAGA Ucu   cg    a
c   -   a   a    GA         CU      G   auu  uaau 


Annotation confidence Not enough data
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Genome context
Crem_Contig15: 1757270-1757363 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from crm-mir-81
Name Accession Chromosome Start End Strand Confidence




Database links

Mature crm-miR-81-5p

Accession MIMAT0011569
Description Caenorhabditis remanei crm-miR-81-5p mature miRNA
Sequence 17 - CGGUUUUCACCUUGAUCUGAG - 37
Evidence experimental
454 [1]

Mature crm-miR-81-3p

Accession MIMAT0011570
Description Caenorhabditis remanei crm-miR-81-3p mature miRNA
Sequence 58 - UGAGAUCAUCGUGAAAGCUAGU - 79
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074