Stem-loop crm-mir-52-2

Accession

MI0011080

Description

Caenorhabditis remanei crm-mir-52-2 precursor miRNA

Gene family

MIPF0000160; mir-52

Sequence

uacccucuacuaccgucCACCCGUACAUAUGUUUCCGUGCUugacauugugcucaauCACGUUACAAUAUAUGGGUCGccggucuuaggcggu
.(((.((((..((((.(.(((((((.((.(((...((((.((((........)))).))))..))))).))))))).).))))..)))).)))

Structure

u   c    cu    u C       C  A   UUC    C    cau 
 acc ucua  accg c ACCCGUA AU UGU   CGUG Uuga   u
 ||| ||||  |||| | ||||||| || |||   |||| ||||    
 ugg ggau  uggc G UGGGUAU UA ACA   GCAC aacu   g
-   c    uc    c C       A  -   -UU    u    cgu 

Annotation confidence Not enough data

Genome context

Crem_Contig20: 701941-702033 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from crm-mir-52-2

Mature crm-miR-52-5p

• Accession: MIMAT0011549
• Description: Caenorhabditis remanei crm-miR-52-5p mature miRNA
• Sequence: 18 - CACCCGUACAUAUGUUUCCGUGCU - 41
• Evidence: experimental ; 454 [1]

Mature crm-miR-52-3p

• Accession: MIMAT0011550
• Description: Caenorhabditis remanei crm-miR-52-3p mature miRNA
• Sequence: 58 - CACGUUACAAUAUAUGGGUCG - 78
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074