Stem-loop crm-mir-45

Accession

MI0011084

Description

Caenorhabditis remanei crm-mir-45 precursor miRNA

Gene family

MIPF0000132; mir-44

Sequence

aacuguaccaaaacgugccacgCUGGAUGUGCUCGUUAGUCAUaauaaccucauuuaguaaggcuuaUGACUAGAGACACAUUCAGCUuggcgccgaacuauaaacagu
.(((((........((((((.((((((((((.((.((((((((((...(((.........))).)))))))))).)))))))))))).))))))..........)))))

Structure

a     --accaaaac      c          C  G          uaa   cau 
 acugu          gugcca gCUGGAUGUG UC UUAGUCAUaa   ccu   u
 |||||          |||||| |||||||||| || ||||||||||   |||   u
 ugaca          cgcggu CGACUUACAC AG GAUCAGUauu   gga   a
-     aauaucaagc      U          -  A          --c   aug 

Annotation confidence Not enough data

Genome context

Crem_Contig1: 1319070-1319178 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from crm-mir-45

Mature crm-miR-45-5p

• Accession: MIMAT0011577
• Description: Caenorhabditis remanei crm-miR-45-5p mature miRNA
• Sequence: 23 - CUGGAUGUGCUCGUUAGUCAU - 43
• Evidence: experimental ; 454 [1]

Mature crm-miR-45-3p

• Accession: MIMAT0011578
• Description: Caenorhabditis remanei crm-miR-45-3p mature miRNA
• Sequence: 68 - UGACUAGAGACACAUUCAGCU - 88
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074