miRBase entry: crm-mir-46

Stem-loop crm-mir-46


Accession
MI0011094
Description
Caenorhabditis remanei crm-mir-46 precursor miRNA
Gene family
MIPF0000087; mir-46


Sequence

aaccgaauaagaggagguaaagcugAAGAGAGCCGUCUAUUGACAGUucguuucuauacuuauguacUGUCAUGGAGUCGCUCUCUUCagaugauccuuucaagguuu
((((.....((((((.......(((((((((((..(((((.((((((.(((..........))).)))))))))))...)))))))))))....))))))...)))).

Structure
-    gaaua      gguaaag           -CG     U      u   uucu 
 aacc     agagga       cugAAGAGAGC   UCUAU GACAGU cgu    a
 ||||     ||||||       |||||||||||   ||||| |||||| |||     
 uugg     uuuccu       gaCUUCUCUCG   AGGUA CUGUca gua    u
u    --aac      ---agua           CUG     -      u   uuca 


Annotation confidence Not enough data
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Genome context
Crem_Contig12: 1283899-1284006 [-]

Database links

Mature crm-miR-46-5p

Accession MIMAT0011597
Description Caenorhabditis remanei crm-miR-46-5p mature miRNA
Sequence 26 - AAGAGAGCCGUCUAUUGACAGU - 47
Evidence experimental
454 [1]

Mature crm-miR-46-3p

Accession MIMAT0011598
Description Caenorhabditis remanei crm-miR-46-3p mature miRNA
Sequence 68 - UGUCAUGGAGUCGCUCUCUUC - 88
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074