miRBase entry: crm-mir-246-2

Stem-loop crm-mir-246-2


Accession
MI0011096
Description
Caenorhabditis remanei crm-mir-246-2 precursor miRNA
Gene family
MIPF0000260; mir-246


Sequence

aguccaaacaauagaacagcACCUGGCCGAUUUCAUGUAAUAUcugaaaagaaaagauaUUACAUGUAUCGGGUAGGAGcuguuugaguaaaggau
.((((........(((((((.((((.(((((..((((((((((((.........)))))))))))).))))).)))).))))))).......))))

Structure
a    aaacaaua       A    G     UU            gaa 
 gucc        gaacagc CCUG CCGAU  CAUGUAAUAUcu   a
 ||||        ||||||| |||| |||||  ||||||||||||   a
 uagg        uuugucG GGAU GGCUA  GUACAUUauaga   g
-    -aaaugag       A    G     -U            aaa 


Annotation confidence Not enough data
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Genome context
Crem_Contig20: 644631-644726 [+]

Database links

Mature crm-miR-246-5p

Accession MIMAT0011571
Description Caenorhabditis remanei crm-miR-246-5p mature miRNA
Sequence 21 - ACCUGGCCGAUUUCAUGUAAUAU - 43
Evidence experimental
454 [1]

Mature crm-miR-246-3p

Accession MIMAT0011572
Description Caenorhabditis remanei crm-miR-246-3p mature miRNA
Sequence 60 - UUACAUGUAUCGGGUAGGAG - 79
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074