miRBase entry: crm-mir-785

Stem-loop crm-mir-785


Accession
MI0011098
Description
Caenorhabditis remanei crm-mir-785 precursor miRNA
Gene family
MIPF0000896; mir-785


Sequence

gaaaccgcucuuuuuuguccgucagcgcagaauuuuuucgcuuacacgaguaauguaaacgaugUAAGUGAAUAUUCUGUGUCGauggguauaaaaagauaaugaugguuu
.((((((((((((((((((((((.(((((((((...((((((((((((...........)).)))))))))).))))))))).)))))))).)))))))....).))))))

Structure
g      - ----       -        a         uuu          -  agua 
 aaaccg c    ucuuuuu uguccguc gcgcagaau   uucgcuuaca cg    a
 |||||| |    ||||||| |||||||| |||||||||   |||||||||| ||    u
 uuuggu g    agaaaaa auggguaG UGUGUCUUA   AAGUGAAUgu gc    g
-      a uaau       u        C         --U          a  aaau 


Annotation confidence Not enough data
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Genome context
Crem_Contig0: 4287759-4287869 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from crm-mir-785
Name Accession Chromosome Start End Strand Confidence




Database links

Mature crm-miR-785

Accession MIMAT0011602
Description Caenorhabditis remanei crm-miR-785 mature miRNA
Sequence 65 - UAAGUGAAUAUUCUGUGUCG - 84
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074