miRBase entry: crm-mir-38

Stem-loop crm-mir-38


Accession
MI0011099
Description
Caenorhabditis remanei crm-mir-38 precursor miRNA
Gene family
MIPF0000096; mir-36


Sequence

uccgauugguugaaagagccagaaccuauaccgguuuaacuucguggugauaugacacauauuacauucuuuaUCACCGGGAGUAAAACUGGUAUaggaucugcgacucgcugauuggaa
((((((((((.....((((((((.(((((((((((((.(((((.((((((((...................))))))))))))).))))))))))))).)))).).))))))))))))).

Structure
-          ugaaa   - -    a             a     g        ugacacau 
 uccgauuggu     gag c caga ccuauaccgguuu acuuc uggugaua        a
 ||||||||||     ||| | |||| ||||||||||||| ||||| ||||||||        u
 agguuagucg     cuc g gucu ggaUAUGGUCAAA UGAGG GCCACUau        u
a          -----   a c    a             A     -        uucuuaca 


Annotation confidence Not enough data
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Genome context
Crem_Contig1: 1740947-1741066 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from crm-mir-38
Name Accession Chromosome Start End Strand Confidence




Database links

Mature crm-miR-38

Accession MIMAT0011603
Description Caenorhabditis remanei crm-miR-38 mature miRNA
Sequence 74 - UCACCGGGAGUAAAACUGGUAU - 95
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074