Stem-loop sequence crm-mir-35g

Accession

MI0011101

Description

Caenorhabditis remanei miR-35g stem-loop

Gene family

MIPF0000096; mir-36

Stem-loop

      ----cu    gac    a  -    ug     g   u         -----   ug 
auugca      ugac   ggga cc gugc  auguu acc cggugauag     gac  a
||||||      ||||   |||| || ||||  ||||| ||| |||||||||     |||   
uagcgu      acug   cccu gg caug  uacaa ugg gccacuauc     uug  a
      uauagu    auu    -  u    gu     g   -         gaaca   cc 

Genome context

• Coordinates (WS200): Crem_Contig93: 222433-222546 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from crm-mir-35g

• crm-mir-35c-2: Crem_Contig93: 223885-224001 [-]
• crm-mir-35e-2: Crem_Contig93: 223699-223796 [-]
• crm-mir-35d-2: Crem_Contig93: 223544-223635 [-]
• crm-mir-35f: Crem_Contig93: 223206-223319 [-]
• crm-mir-35c-3: Crem_Contig93: 223069-223163 [-]
• crm-mir-35e-1: Crem_Contig93: 222856-222943 [-]
• crm-mir-35d-1: Crem_Contig93: 222710-222800 [-]
• crm-mir-35g: Crem_Contig93: 222433-222546 [-]
• crm-mir-35c-1: Crem_Contig93: 222297-222390 [-]
• crm-mir-35a-2: Crem_Contig93: 221979-222067 [-]
• crm-mir-35b: Crem_Contig93: 221703-221796 [-]
• crm-mir-35a-1: Crem_Contig93: 221595-221680 [-]

Mature sequence crm-miR-35g

• Accession: MIMAT0011605
• Sequence: 68 - ucaccgggugaacauugguacu - 89
• Evidence: experimental; 454 [1]

References

1. PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).