Stem-loop sequence crm-mir-790-1

Accession MI0011105
Description Caenorhabditis remanei miR-790-1 stem-loop
Gene family MIPF0000362; mir-790
Stem-loop 
u     -ucaa    c ----u    a   c   g    c  g   a       c      
 ucgaa     gguc c     uuug cug uug cacu gc aac ccgcgau uuauc 
 |||||     |||| |     |||| ||| ||| |||| || ||| ||||||| |||| a
 aguuu     ucag g     aagc gac aac gugg cg uug ggcgcua aauag 
a     uucac    a uuugu    g   c   g    c  a   a       -
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Genome context
Coordinates (WS200) Overlapping transcripts
Crem_Contig61: 95769-95883 [-]
intergenic
Clustered miRNAs
< 10kb from crm-mir-790-1
crm-mir-228 Crem_Contig61: 99434-99527 [-]
crm-mir-790-1 Crem_Contig61: 95769-95883 [-]

Mature sequence crm-miR-790

Accession MIMAT0011543
Sequence

26 -  

cuuggcacucgcgaacaccgcg

 - 47

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Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).