miRBase entry: crm-mir-788

Stem-loop crm-mir-788


Accession
MI0011106
Description
Caenorhabditis remanei crm-mir-788 precursor miRNA
Gene family
MIPF0000974; mir-788


Sequence

ggccugaaacuuacgucUCCGCUUCUAACUUCCAUUUGCAGaguucaucaauucucuggaaauggauuagaaccgugaaauguuaguaugauggucc
(((((.(.(((.((((.((((.((((((..(((((((.(((((..........))))).))))))))))))).)).)).)))).))).).).)))).

Structure
-    - g a   u    c  -  C      CU       G     uuca 
 ggcc u a acu acgu UC CG UUCUAA  UCCAUUU CAGag    u
 |||| | | ||| |||| || || ||||||  ||||||| |||||     
 cugg a u uga ugua ag gc aagauu  agguaaa gucuc    c
c    u g a   u    a  u  c      --       g     uuaa 


Annotation confidence Not enough data
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Genome context
Crem_Contig72: 198587-198683 [-]

Database links

Mature crm-miR-788

Accession MIMAT0011608
Description Caenorhabditis remanei crm-miR-788 mature miRNA
Sequence 18 - UCCGCUUCUAACUUCCAUUUGCAG - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074