Stem-loop crm-mir-58b

Accession

MI0011112

Description

Caenorhabditis remanei crm-mir-58b precursor miRNA

Gene family

MIPF0000282; mir-58

Sequence

cguuugaugcucgccauauccauUGCCCUACUAUUCGCAUCUCAUCacuuccuccaguaauauaaggaUGAGAUCGUUCAGUACGGCAAUggaaagagcuauauaacga
((((..((((((......(((((((((.((((...((.((((((((.(((.............)))))))))))))...)))).)))))))))..)))).))..)))).

Structure

-    ug  -    gccaua         C    AUU  C        a   ccucc 
 cguu  au gcuc      uccauUGCC UACU   CG AUCUCAUC cuu     a
 ||||  || ||||      ||||||||| ||||   || |||||||| |||     g
 gcaa  ua cgag      aggUAACGG AUGA   GC UAGAGUag gaa     u
a    ua  u    ----aa         C    CUU  -        -   uauaa 

Annotation confidence Not enough data

Genome context

Crem_Contig49: 415875-415983 [+]

Mature crm-miR-58b-5p

• Accession: MIMAT0011614
• Description: Caenorhabditis remanei crm-miR-58b-5p mature miRNA
• Sequence: 24 - UGCCCUACUAUUCGCAUCUCAUC - 46
• Evidence: experimental ; 454 [1]

Mature crm-miR-58b-3p

• Accession: MIMAT0011615
• Description: Caenorhabditis remanei crm-miR-58b-3p mature miRNA
• Sequence: 69 - UGAGAUCGUUCAGUACGGCAAU - 90
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074