Stem-loop crm-mir-239a

Accession

MI0011113

Description

Caenorhabditis remanei crm-mir-239a precursor miRNA

Gene family

MIPF0000135; mir-239

Sequence

aauccaagauugcgauuUUUGUACUACACAUAGGUACUGGacacugagauuuguaucCAGAAUCUAUUCUAGUGCaaaaauugcucuggauuc
((((((.((..(((((((((((((((...((((((.(((((.((........)).))))).))))))..))))))))))))))))))))))).

Structure

-      a  uu               CAC      A     c  uga 
 aaucca ga  gcgauuUUUGUACUA   AUAGGU CUGGa ac   g
 |||||| ||  |||||||||||||||   |||||| ||||| ||    
 uuaggu cu  cguuaaaaaCGUGAU   UAUCUA GACcu ug   a
c      -  --               -CU      A     a  uuu 

Annotation confidence Not enough data

Genome context

Crem_Contig93: 351743-351835 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from crm-mir-239a

Mature crm-miR-239a-5p

• Accession: MIMAT0011616
• Description: Caenorhabditis remanei crm-miR-239a-5p mature miRNA
• Sequence: 18 - UUUGUACUACACAUAGGUACUGG - 40
• Evidence: experimental ; 454 [1]

Mature crm-miR-239a-3p

• Accession: MIMAT0011617
• Description: Caenorhabditis remanei crm-miR-239a-3p mature miRNA
• Sequence: 58 - CAGAAUCUAUUCUAGUGC - 75
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074