Stem-loop crm-mir-80

Accession

MI0011115

Description

Caenorhabditis remanei crm-mir-80 precursor miRNA

Gene family

MIPF0000258; mir-80

Sequence

ggacacucuuucgcucAGCUUUCGACAUGAUUCUaaacaauacgucgagacaauguuguUGAGAUCAUUAGUUGAAAGCCGaacgauuuugagauaucca
(((..(((..(((.((.((((((((((((((.((.(((((((.((....))..))))))).)))))))..))))))))).)).)))....)))...))).

Structure

-   -ca   --uu   c  A         --     U  a       -c  c 
 gga   cuc    ucg uc GCUUUCGAC  AUGAU CU aacaaua  gu g
 |||   |||    ||| || |||||||||  ||||| || |||||||  ||  
 ccu   gag    agc aG CGAAAGUUG  UACUA GA Uuguugu  ca a
a   aua   uuuu   a  C         AU     -  G       aa  g 

Annotation confidence Not enough data

Genome context

Crem_Contig431: 2337-2436 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from crm-mir-80

Mature crm-miR-80-5p

• Accession: MIMAT0011620
• Description: Caenorhabditis remanei crm-miR-80-5p mature miRNA
• Sequence: 17 - AGCUUUCGACAUGAUUCU - 34
• Evidence: experimental ; 454 [1]

Mature crm-miR-80-3p

• Accession: MIMAT0011621
• Description: Caenorhabditis remanei crm-miR-80-3p mature miRNA
• Sequence: 60 - UGAGAUCAUUAGUUGAAAGCCG - 81
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074