miRBase entry: crm-mir-2228

Stem-loop crm-mir-2228


Accession
MI0011118
Description
Caenorhabditis remanei crm-mir-2228 precursor miRNA


Sequence

gaucggugaguugaauuccauuuuugugucuauuuuccgagcugcguugacugaaaagaauuucgagUCAUCCAUCUCUGAAAUUAGACacgaauugucggaguauguuuaugauuu
(((((.((((....(((((((.((((((((((.((((.(((.((.(.(((((((((....)))).))))).))).))).)))).))))))))))..)).)))))...))))))))).

Structure
-     g    uuga     -  -u          u    c   c  c u     -    a 
 gaucg ugag    auucc au  uuugugucua uuuc gag ug g ugacu gaaa g
 ||||| ||||    ||||| ||  |||||||||| |||| ||| || | ||||| ||||  
 uuagu auuu    ugagg ug  aagcaCAGAU AAAG CUC AC C ACUga cuuu a
u     -    -gua     c  uu          U    U   U  - U     g    a 


Annotation confidence Not enough data
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Genome context
Crem_Contig74: 221632-221748 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from crm-mir-2228
Name Accession Chromosome Start End Strand Confidence




Database links

Mature crm-miR-2228

Accession MIMAT0011625
Description Caenorhabditis remanei crm-miR-2228 mature miRNA
Sequence 68 - UCAUCCAUCUCUGAAAUUAGAC - 89
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074