miRBase entry: crm-mir-2229

Stem-loop crm-mir-2229


Accession
MI0011120
Description
Caenorhabditis remanei crm-mir-2229 precursor miRNA
Gene family
MIPF0001694; mir-2229


Sequence

guuguuauauguucacaguucccacagggcuuuccacacucauugagaagcguUGAAAGACUGAUGGGUCCUGGGaacagauauuacaaca
(((((.((((((((.(((..(((((((..(((((.((.((........)).)).))))).))).))))..))).)))))..))).))))).

Structure
-     u   --     a   uu    -   gg     c  a  cau 
 guugu aua  uguuc cag  ccca cag  cuuuc ac cu   u
 ||||| |||  ||||| |||  |||| |||  ||||| || ||    
 caaca uau  acaaG GUC  GGGU GUC  GAAAG ug ga   g
a     u   ag     G   CU    A   -A     U  c  aga 


Annotation confidence Not enough data
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Genome context
Crem_Contig0: 2910785-2910875 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from crm-mir-2229
Name Accession Chromosome Start End Strand Confidence




Database links

Mature crm-miR-2229

Accession MIMAT0011627
Description Caenorhabditis remanei crm-miR-2229 mature miRNA
Sequence 54 - UGAAAGACUGAUGGGUCCUGGG - 75
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074