Stem-loop sequence crm-mir-66

Accession MI0011125
Description Caenorhabditis remanei miR-66 stem-loop
Stem-loop 
   - -    -gaaaa     caa       ca      a a       a     - -    aa 
ucc c accg      gaaca   agccaug  ugacac g uuaaagg uguga c acuu  c
||| | ||||      |||||   |||||||  |||||| | ||||||| ||||| | ||||   
agg g uggc      cuugu   ucgguac  acugug c gauuucc acacu g ugaa  a
   a a    augagg     ---       ag      c -       -     a a    ca
Get sequence
Deep sequencing
321 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
Crem_Contig41: 72081-72200 [+]
intergenic
Clustered miRNAs
< 10kb from crm-mir-66
crm-mir-64a Crem_Contig41: 71965-72073 [+]
crm-mir-66 Crem_Contig41: 72081-72200 [+]
crm-mir-64b Crem_Contig41: 72225-72316 [+]
crm-mir-64c Crem_Contig41: 72317-72434 [+]
crm-mir-64d Crem_Contig41: 72472-72586 [+]
crm-mir-64e Crem_Contig41: 72615-72729 [+]

Mature sequence crm-miR-66-5p

Accession MIMAT0011635
Previous IDs crm-miR-66
Sequence

29 -  

caugacacagauuaaaggaugug

 - 51

Get sequence
Deep sequencing 314 reads, 1 experiments
Evidence experimental; 454 [1]

Mature sequence crm-miR-66-3p

Accession MIMAT0011636
Previous IDs crm-miR-66*
Sequence

73 -  

acaccuuuagccgugucagac

 - 93

Get sequence
Deep sequencing 7 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).