Stem-loop sequence crm-mir-64b

Accession MI0011126
Description Caenorhabditis remanei miR-64b stem-loop
Gene family MIPF0000967; mir-64_2
Stem-loop 
-     -         c        c  g     c     --   acu 
 ggggc cucgccgau augacacu aa cauac augga  cug   u
 ||||| ||||||||| |||||||| || ||||| |||||  |||    
 ccccg gagcggcua uauuguga uu guaug uaccu  gac   u
c     u         c        -  g     -     aa   gac
Get sequence
Deep sequencing
82 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
Crem_Contig41: 72225-72316 [+]
intergenic
Clustered miRNAs
< 10kb from crm-mir-64b
crm-mir-64a Crem_Contig41: 71965-72073 [+]
crm-mir-66 Crem_Contig41: 72081-72200 [+]
crm-mir-64b Crem_Contig41: 72225-72316 [+]
crm-mir-64c Crem_Contig41: 72317-72434 [+]
crm-mir-64d Crem_Contig41: 72472-72586 [+]
crm-mir-64e Crem_Contig41: 72615-72729 [+]

Mature sequence crm-miR-64b-5p

Accession MIMAT0011637
Previous IDs crm-miR-64b
Sequence

15 -  

caugacacucaagcauaccaugg

 - 37

Get sequence
Deep sequencing 81 reads, 1 experiments
Evidence experimental; 454 [1]

Mature sequence crm-miR-64b-3p

Accession MIMAT0011638
Previous IDs crm-miR-64b*
Sequence

57 -  

cauguaugguuaguguuaucau

 - 78

Get sequence
Deep sequencing 1 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).