miRBase entry: crm-mir-64b

Stem-loop crm-mir-64b


Accession
MI0011126
Description
Caenorhabditis remanei crm-mir-64b precursor miRNA
Gene family
MIPF0000967; mir-64_2

Literature search
1 open access papers mention crm-mir-64b
(18 sentences)

Sequence

ggggccucgccgauCAUGACACUCAAGCAUACCAUGGacugacuuucagcagaaucCAUGUAUGGUUAGUGUUAUCAUcggcgagugccccc
((((((((((((((.((((((((.((.(((((.((((((((........)))..)))))))))).)))))))))).))))))))).))))).

Structure
-     -         C        C  G     C     --   acu 
 ggggc cucgccgau AUGACACU AA CAUAC AUGGa  cug   u
 ||||| ||||||||| |||||||| || ||||| |||||  |||    
 ccccg gagcggcUA UAUUGUGA UU GUAUG UACcu  gac   u
c     u         C        -  G     -     aa   gac 


Annotation confidence Not enough data
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Genome context
Crem_Contig41: 72225-72316 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from crm-mir-64b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature crm-miR-64b-5p

Accession MIMAT0011637
Description Caenorhabditis remanei crm-miR-64b-5p mature miRNA
Sequence 15 - CAUGACACUCAAGCAUACCAUGG - 37
Evidence experimental
454 [1]

Mature crm-miR-64b-3p

Accession MIMAT0011638
Description Caenorhabditis remanei crm-miR-64b-3p mature miRNA
Sequence 57 - CAUGUAUGGUUAGUGUUAUCAU - 78
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074