Stem-loop ppc-mir-1

Accession

MI0011127

Description

Pristionchus pacificus ppc-mir-1 precursor miRNA

Gene family

MIPF0000038; mir-1

Literature search

1 open access papers mention ppc-mir-1
(4 sentences)

Sequence

cucucacuccucauucaccguuccguacuucuuugcagccccauacuugcccgcaugaagugguuaUGGAAUGUAAAGAAGUAUGUaauggucgaggcgagagc
(((((...((((....((((((.((((((((((((((...(((((.....((((.....)))).)))))..)))))))))))))).)))))).)))).))))).

Structure

-     acu    auuc      c              gcc     cuugc    a 
 cucuc   ccuc    accguu cguacuucuuugca   ccaua     ccgc u
 |||||   ||||    |||||| ||||||||||||||   |||||     |||| g
 gagag   ggag    ugguaa GUAUGAAGAAAUGU   GGUau     ggug a
c     --c    ---c      U              -AA     ----u    a 

Annotation confidence Not enough data

Genome context

ABKE03000090.1: 2889265-2889368 [+]

Mature ppc-miR-1

• Accession: MIMAT0011639
• Description: Pristionchus pacificus ppc-miR-1 mature miRNA
• Sequence: 67 - UGGAAUGUAAAGAAGUAUGU - 86
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074