Stem-loop sequence ppc-mir-45

Accession MI0011128
Description Pristionchus pacificus miR-45 stem-loop
Gene family MIPF0000132; mir-44
Stem-loop 
-      ca      cu          ga   u       -  --c c  a 
 gagucg  gccccg  cuggaugugu  ucu ggucgua uc   g gc a
 ||||||  ||||||  ||||||||||  ||| ||||||| ||   | ||  
 cucggc  cggggu  gacuuacaca  aga ucaguau ag   c cg a
u      --      uc          -g   -       u  uaa u  u
Get sequence
Deep sequencing
98 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
Ppa_Contig112: 331568-331663 [-]
intergenic
Clustered miRNAs
< 10kb from ppc-mir-45
ppc-mir-42a Ppa_Contig112: 331735-331839 [-]
ppc-mir-45 Ppa_Contig112: 331568-331663 [-]

Mature sequence ppc-miR-45

Accession MIMAT0011640
Sequence

63 -  

ugacuagagacacauucagcu

 - 83

Get sequence
Deep sequencing 98 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).