Stem-loop ppc-mir-42a

Accession

MI0011129

Description

Pristionchus pacificus ppc-mir-42a precursor miRNA

Sequence

gugcauucagugcagcccgcagugggugucugccucggucugaagugugagaugcaugauccuccguucuUCACCGGGUGAACAUCCAUUGCgggcgcaugcacc
(((((.....(((.(((((((((((((((.((((.((((..((((...(((((.....)).)))....)))))))))))).))))))))))))))))))))))).

Structure

-     uucag   a               c    u    cu    -ugu   -  g 
 gugca     ugc gcccgcagugggugu ugcc cggu  gaag    gag au c
 |||||     ||| ||||||||||||||| |||| ||||  ||||    ||| || a
 cacgu     acg cgggCGUUACCUACA GUGG GCCA  CUuc    cuc ua u
c     -----   -               A    -    --    uugc   c  g 

Annotation confidence Not enough data

Genome context

ABKE03000123.1: 6561540-6561644 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-42a

Mature ppc-miR-42a

• Accession: MIMAT0011641
• Description: Pristionchus pacificus ppc-miR-42a mature miRNA
• Sequence: 71 - UCACCGGGUGAACAUCCAUUGC - 92
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074