Stem-loop ppc-mir-252

Accession

MI0011137

Description

Pristionchus pacificus ppc-mir-252 precursor miRNA

Gene family

MIPF0000285; mir-252

Sequence

gaucaccuaucacucuguccggguuCUAAGUAGUAGUGCCGCAGGUaaccaacaauugagagguuuaccuauagccuucugcuuaacaccuugaagaguugaucu
(((((......(((((.((.((((..(((((((.((.((...((((((((...........)).))))))...)))).)))))))..)))).)))))))))))).

Structure

-     ccuauc     g  c    uC       U  U  CGC      -  aaca 
 gauca      acucu uc gggu  UAAGUAG AG GC   AGGUaa cc    a
 |||||      ||||| || ||||  ||||||| || ||   |||||| ||    u
 cuagu      ugaga ag ucca  auucguc uc cg   uccauu gg    u
u     ------     -  u    ca       u  -  aua      u  agag 

Annotation confidence Not enough data

Genome context

ABKE03000131.1: 374300-374404 [-]

Mature ppc-miR-252

• Accession: MIMAT0011649
• Description: Pristionchus pacificus ppc-miR-252 mature miRNA
• Sequence: 26 - CUAAGUAGUAGUGCCGCAGGU - 46
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074