Stem-loop ppc-mir-63b

Accession

MI0011138

Description

Pristionchus pacificus ppc-mir-63b precursor miRNA

Gene family

MIPF0000823; mir-63

Sequence

gaacuauccgauccaucgcucacaugggaacccucucgacuuuugugucuuagacuguuucgaaaaguucUAUGACACUGAAGCGAGAGUGUucccagugaacuuuugggucaguuc
(((((....((((((....((((.(((((((.((((((.((((.(((((.((((((.........)).)))).))))).)))))))))).))))))))))).....)))))))))))

Structure

     aucc      -ucgc    a       c      a    u     u    -  guu 
gaacu    gaucca     ucac ugggaac cucucg cuuu guguc uaga cu   u
|||||    ||||||     |||| ||||||| |||||| |||| ||||| |||| ||   c
cuuga    cugggu     agug acccuUG GAGAGC GAAG CACAG AUcu ga   g
     ----      uuuca    -       U      -    U     U    u  aaa 

Annotation confidence Not enough data

Genome context

Unknown

Mature ppc-miR-63b

• Accession: MIMAT0011650
• Description: Pristionchus pacificus ppc-miR-63b mature miRNA
• Sequence: 71 - UAUGACACUGAAGCGAGAGUGU - 92
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074