miRBase entry: ppc-mir-63c-2

Stem-loop ppc-mir-63c-2


Accession
MI0011140
Description
Pristionchus pacificus ppc-mir-63c-2 precursor miRNA
Gene family
MIPF0000823; mir-63


Sequence

gguacccgaaccauaauccaugcgggguuccauucgcaugaguuucauggacucgauucauagaucUAUGACACUCAAUGCGAGAUGGGaccucgguggaccaaugguucgguacc
((((((.(((((((..(((((.(((((((((((((((((((((.(((((((.((........))))))))).)))).)))))).))))))))))))))))...)))))))))))))

Structure
      c       -aa     g           -      -    u       c  gau 
gguacc gaaccau   uccau cgggguuccau ucgcau gagu ucaugga uc   u
|||||| |||||||   ||||| ||||||||||| |||||| |||| ||||||| ||    
ccaugg cuuggua   aggug gcuccaGGGUA AGCGUA CUCA AGUAUcu ag   c
      -       acc     -           G      A    C       -  aua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ppc-miR-63c

Accession MIMAT0011651
Description Pristionchus pacificus ppc-miR-63c mature miRNA
Sequence 67 - UAUGACACUCAAUGCGAGAUGGG - 89
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074