miRBase entry: ppc-mir-63c-3

Stem-loop ppc-mir-63c-3


Accession
MI0011141
Description
Pristionchus pacificus ppc-mir-63c-3 precursor miRNA
Gene family
MIPF0000823; mir-63


Sequence

gguacccgaaccauaauccaugugggguuccauucgcaugaguuucauggacucgauucauagaucUAUGACACUCAAUGCGAGAUGGGaccucgguggaccauugguacgguacc
((((((.(.((((...(((((.(((((((((((((((((((((.(((((((.((........))))))))).)))).)))))).))))))))))))))))....)))).)))))))

Structure
      c a    -uaa     g           -      -    u       c  gau 
gguacc g acca    uccau ugggguuccau ucgcau gagu ucaugga uc   u
|||||| | ||||    ||||| ||||||||||| |||||| |||| ||||||| ||    
ccaugg c uggu    aggug gcuccaGGGUA AGCGUA CUCA AGUAUcu ag   c
      - a    uacc     -           G      A    C       -  aua 


Annotation confidence Not enough data
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Genome context
ABKE03000073.1: 892918-893033 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from ppc-mir-63c-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-63c

Accession MIMAT0011651
Description Pristionchus pacificus ppc-miR-63c mature miRNA
Sequence 67 - UAUGACACUCAAUGCGAGAUGGG - 89
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074