Stem-loop sequence ppc-mir-42b

Accession MI0011145
Description Pristionchus pacificus miR-42b stem-loop
Stem-loop 
c      cc u    uu   a      -c    c      ugu  a 
 ucugag  g gccu  guc cagaau  ccug gugacc   ga u
 ||||||  | ||||  ||| ||||||  |||| ||||||   || u
 aggcuc  c cgga  cag gucuua  gggc cacugg   cu g
-      uc u    uc   c      uu    -      -uu  a
Get sequence
Deep sequencing
2 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
Ppa_Contig89: 123598-123688 [+]
intergenic
Clustered miRNAs
< 10kb from ppc-mir-42b
ppc-mir-38 Ppa_Contig89: 123474-123571 [+]
ppc-mir-42b Ppa_Contig89: 123598-123688 [+]

Mature sequence ppc-miR-42b

Accession MIMAT0011654
Sequence

56 -  

ucaccggguuauucugcgaccu

 - 77

Get sequence
Deep sequencing 2 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).