miRBase entry: ppc-mir-86

Stem-loop ppc-mir-86


Accession
MI0011155
Description
Pristionchus pacificus ppc-mir-86 precursor miRNA
Gene family
MIPF0000247; mir-86


Sequence

ccuugaucggccaugccggcUAAGUGAAUUUCUUGCCACAGUCuuagccuaauucacaaggcugggcaauacuuucgcuugcgccggcuagaagaacggugaggg
((((.((((..(..((((((((((((((....(((((.(((((((............))))))))))))....)))))))).)))))).....)..)))).))))

Structure
    g    gc ---au      -        UUUC     A       agccu 
ccuu aucg  c     gccggc UAAGUGAA    UUGCC CAGUCuu     a
|||| ||||  |     |||||| ||||||||    ||||| |||||||      
ggga uggc  g     cggccg guucgcuu    aacgg gucggaa     a
    g    aa aagau      c        ucau     -       cacuu 


Annotation confidence Not enough data
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Genome context
ABKE03000122.1: 227947-228051 [-]

Database links

Mature ppc-miR-86

Accession MIMAT0011662
Description Pristionchus pacificus ppc-miR-86 mature miRNA
Sequence 21 - UAAGUGAAUUUCUUGCCACAGUC - 43
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074