Stem-loop ppc-mir-242

Accession

MI0011156

Description

Pristionchus pacificus ppc-mir-242 precursor miRNA

Sequence

aaaagguuagucagcugggacgguccgugguUUGCGUAGGCCUUCGAUUGGCGauauuucugcacaugaaugcaucgcgcaucgacgaucugcgcaugccaugaacguuccauaccuuuu
(((((((........(((((((...((((((.((((((((.(.(((((..((((......((((......))))))))..))))).).)))))))).))))))..))))))).)))))))

Structure

       uagucagc       guc      U        C U     UG    uauuuc    ca 
aaaaggu        ugggacg   cguggu UGCGUAGG C UCGAU  GCGa      ugca  u
|||||||        |||||||   |||||| |||||||| | |||||  ||||      ||||   
uuuucca        accuugc   guaccg acgcgucu g agcua  cgcu      acgu  g
       -------u       -aa      u        a c     cg    ------    aa 

Annotation confidence Not enough data

Genome context

ABKE03000024.1: 8175369-8175488 [+]

Mature ppc-miR-242

• Accession: MIMAT0011663
• Description: Pristionchus pacificus ppc-miR-242 mature miRNA
• Sequence: 32 - UUGCGUAGGCCUUCGAUUGGCG - 53
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074