Stem-loop ppc-mir-63f

Accession

MI0011157

Description

Pristionchus pacificus ppc-mir-63f precursor miRNA

Gene family

MIPF0000823; mir-63

Sequence

cagagccuuccaccugggguuccauucguaugaguuucauggacuuucccuacagcucUAUGACACUGAGUGCGGAGUGGaaccccuauggauaauaguucu
.(((((..((((...((((((((((((((((.(((.(((((((((........)).))))))).)))..)))).))))))))))))..)))).....)))))

Structure

c     ---cu    ccu            -    -g   u       -  uuc 
 agagc     ucca   gggguuccauuc guau  agu ucaugga cu   c
 |||||     ||||   |||||||||||| ||||  ||| ||||||| ||    
 ucuug     aggu   ccccaaGGUGAG CGUG  UCA AGUAUcu ga   c
-     auaau    -au            G    AG   C       c  cau 

Annotation confidence Not enough data

Genome context

ABKE03000073.1: 893370-893471 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from ppc-mir-63f

Mature ppc-miR-63f

• Accession: MIMAT0011664
• Description: Pristionchus pacificus ppc-miR-63f mature miRNA
• Sequence: 59 - UAUGACACUGAGUGCGGAGUGG - 80
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074