Stem-loop ppc-mir-2253b

Accession

MI0011161

Description

Pristionchus pacificus ppc-mir-2253b precursor miRNA

Gene family

MIPF0000915; mir-2253

Sequence

gauguaacuagcaguugacugaacauuucggacuuucaacaggccauacaccuaauguuaugUAUGGCACUGCUGAAGGUCCGaaagcugcaaaagaguaaaaaaaauacguu
..........(((((..........(((((((((((((.(((((((((((..........)))))))).))).))))))))))))))))))......................

Structure

------------gauguaacua     ugacugaaca             a   -        ccua 
                      gcagu          uuucggacuuuca cag gccauaca    a
                      |||||          ||||||||||||| ||| ||||||||     
                      cgucg          aaaGCCUGGAAGU GUC CGGUAUgu    u
uugcauaaaaaaaaugagaaaa     ----------             C   A        auug 

Annotation confidence Not enough data

Genome context

ABKE03000092.1: 1315868-1315980 [+]

Mature ppc-miR-2253b

• Accession: MIMAT0011668
• Description: Pristionchus pacificus ppc-miR-2253b mature miRNA
• Sequence: 63 - UAUGGCACUGCUGAAGGUCCG - 83
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074