Stem-loop ppc-mir-2234b

Accession

MI0011164

Description

Pristionchus pacificus ppc-mir-2234b precursor miRNA

Sequence

cgcguaagaccucgcgacaucuucucuucgguagauccgaacaucuccacccuuccaguaagcggUGAUAUGUCGCGAUUUACCGaagggagaucgugaggcaacuaccaccgug
((((..((.((((((((..(((((.(((((((((((((((.(((.((.((((((.....))).))))).)))))).)))))))))))))))))))))))))...)).....))))

Structure

    ---ua  --a        ca     u            -   a   c  c   -   c 
cgcg     ag   ccucgcga  ucuuc cuucgguagauc cga cau uc acc cuu c
||||     ||   ||||||||  ||||| |||||||||||| ||| ||| || ||| ||| a
gugc     uc   ggagugcu  agagg gaaGCCAUUUAG GCU GUA AG Ugg gaa g
    cacca  aac        --     -            C   -   U  -   c   u 

Annotation confidence Not enough data

Genome context

ABKE03000131.1: 532439-532553 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-2234b

Mature ppc-miR-2234b

• Accession: MIMAT0011671
• Description: Pristionchus pacificus ppc-miR-2234b mature miRNA
• Sequence: 66 - UGAUAUGUCGCGAUUUACCG - 85
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074