miRBase entry: ppc-mir-2248

Stem-loop ppc-mir-2248


Accession
MI0011167
Description
Pristionchus pacificus ppc-mir-2248 precursor miRNA


Sequence

gagcgcucaccaguccggCUCCAGAACACGUCAAGAGAGacacuucaccucucgggaagcagcccucucucucucucuugacuggucuggaaccagacuccgcgcuc
((((((.....((((.((.((((((.((.(((((((((((..((((.((....))))))............))))))))))))).)))))).)).))))..))))))

Structure
      ucacc    c  C      A  C           ----------ca    a  u 
gagcgc     aguc gg UCCAGA CA GUCAAGAGAGa            cuuc cc c
||||||     |||| || |||||| || |||||||||||            |||| ||  
cucgcg     ucag cc aggucu gu caguucucucu            gaag gg u
      ---cc    a  a      g  -           cucucucccgac    -  c 


Annotation confidence Not enough data
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Genome context
ABKE03000060.1: 8726562-8726668 [-]

Database links

Mature ppc-miR-2248

Accession MIMAT0011674
Description Pristionchus pacificus ppc-miR-2248 mature miRNA
Sequence 19 - CUCCAGAACACGUCAAGAGAG - 39
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074