Stem-loop ppc-mir-63e

Accession

MI0011170

Description

Pristionchus pacificus ppc-mir-63e precursor miRNA

Gene family

MIPF0000823; mir-63

Sequence

aaaggcccguccaguuuucuccgcucgcuuguagugucauggcccucaaucggucuggugcUAUGACGUAGAAGCGAGUGAAGagaacggucggagcucuu
...((((((.((.(((((((.(((((((((.((.(((((((((((...........)).))))))))))).))))))))).))))))))).))).)))...

Structure

aaa   -   u  a       c         g  g         -  ucaa 
   ggc ccg cc guuuucu cgcucgcuu ua ugucauggc cc    u
   ||| ||| || ||||||| ||||||||| || ||||||||| ||    c
   ucg ggc gg caagaGA GUGAGCGAA AU GCAGUAUcg gg    g
uuc   a   u  -       A         G  -         u  ucug 

Annotation confidence Not enough data

Genome context

ABKE03000028.1: 916252-916352 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-63e

Mature ppc-miR-63e

• Accession: MIMAT0011677
• Description: Pristionchus pacificus ppc-miR-63e mature miRNA
• Sequence: 62 - UAUGACGUAGAAGCGAGUGAAG - 83
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074