Stem-loop sequence ppc-mir-2235-5

Accession MI0011178
Description Pristionchus pacificus miR-2235-5 stem-loop
Gene family MIPF0000825; mir-2235
Stem-loop 
-   ccg  cuu     c    u    a  g     uu    -  aa 
 ggg   cu   gcccg ucau caau uu ccggu  gaac ga  u
 |||   ||   ||||| |||| |||| || |||||  |||| ||   
 ccc   ga   cgggc agua guua ga ggcca  cuug cu  u
u   --a  cuu     u    u    c  g     --    a  ag
Get sequence
Deep sequencing
6 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
Ppa_Contig184: 57887-57976 [-]
intergenic
Clustered miRNAs
< 10kb from ppc-mir-2235-5
ppc-mir-2235-8 Ppa_Contig184: 58863-58949 [-]
ppc-mir-2235-7 Ppa_Contig184: 58637-58726 [-]
ppc-mir-2235-6 Ppa_Contig184: 58412-58501 [-]
ppc-mir-2235-5 Ppa_Contig184: 57887-57976 [-]
ppc-mir-2235-4 Ppa_Contig184: 57663-57752 [-]
ppc-mir-2235-3 Ppa_Contig184: 57439-57528 [-]
ppc-mir-2235-2 Ppa_Contig184: 57215-57304 [-]
ppc-mir-2235-1 Ppa_Contig184: 56991-57080 [-]

Mature sequence ppc-miR-2235

Accession MIMAT0011681
Sequence

55 -  

ucaccgggagcauuguaugauc

 - 76

Get sequence
Deep sequencing 48 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).