miRBase entry: ppc-mir-2235a-5

Stem-loop ppc-mir-2235a-5


Accession
MI0011178
Description
Pristionchus pacificus ppc-mir-2235a-5 precursor miRNA
Gene family
MIPF0000825; mir-2235


Sequence

gggccgcucuugcccgcUCAUUCAAUAUUGCCGGUUUGAACgaaauugaucaguUCACCGGGAGCAUUGUAUGAUCgggcuucagacccu
(((...((...(((((.((((.((((.((.(((((..((((((......)).))))))))).)).)))).)))).)))))...)).))).

Structure
-   ccg  cuu     c    U    A  G     UU    -  aa 
 ggg   cu   gcccg UCAU CAAU UU CCGGU  GAAC ga  u
 |||   ||   ||||| |||| |||| || |||||  |||| ||   
 ccc   ga   cgggC AGUA GUUA GA GGCCA  CUug cu  u
u   --a  cuu     U    U    C  G     --    a  ag 


Annotation confidence Not enough data
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Genome context
ABKE03000123.1: 4486054-4486143 [-]
Clustered miRNAs
12 other miRNAs are < 10 kb from ppc-mir-2235a-5
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-2235a-3p

Accession MIMAT0011681
Description Pristionchus pacificus ppc-miR-2235a-3p mature miRNA
Sequence 55 - UCACCGGGAGCAUUGUAUGAUC - 76
Evidence experimental
454 [1]

Mature ppc-miR-2235a-5p

Accession MIMAT0032107
Description Pristionchus pacificus ppc-miR-2235a-5p mature miRNA
Sequence 18 - UCAUUCAAUAUUGCCGGUUUGAAC - 41
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074

  2. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260