Stem-loop ppc-mir-2238b-1

Accession

MI0011182

Description

Pristionchus pacificus ppc-mir-2238b-1 precursor miRNA

Gene family

MIPF0000822; mir-2238

Sequence

cccuccauggaacuagucugccuacuucccgucuacuccuuucgucauucguugauacgaauacgAAUGACAAUCGAGUGGGUGAGaaggaagacuugcuuccuugguuggu
((..(((.(((((.(((((.....((((.(((((((((..((.(((((((((..........)))))))))))..))))))))).))))..))))).).)))).)))..)).

Structure

-  cu   u    - u     gccua    c         cu  c         ugau 
 cc  cca ggaa c agucu     cuuc cgucuacuc  uu gucauucgu    a
 ||  ||| |||| | |||||     |||| |||||||||  || |||||||||     
 gg  ggu ccuu g ucaga     gaaG GUGGGUGAG  AA CAGUAAgca    c
u  uu   u    c u     ---ag    A         CU  -         uaag 

Annotation confidence Not enough data

Genome context

ABKE03000059.1: 713454-713565 [-]

Mature ppc-miR-2238b

• Accession: MIMAT0011682
• Description: Pristionchus pacificus ppc-miR-2238b mature miRNA
• Sequence: 66 - AAUGACAAUCGAGUGGGUGAG - 86
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074