Stem-loop sequence ppc-mir-2238b-1

Accession MI0011182
Description Pristionchus pacificus miR-2238b-1 stem-loop
Gene family MIPF0000822; mir-2238
Stem-loop 
-  cu   u    - u     gccua    c gu      cu  c         ugau 
 cc  cca ggaa c agucu     cuuc c  cuacuc  uu gucauucgu    a
 ||  ||| |||| | |||||     |||| |  ||||||  || |||||||||     
 gg  ggu ccuu g ucaga     gaag g  ggugag  aa caguaagca    c
u  uu   u    c u     ---ag    a ug      cu  -         uaag
Get sequence
Deep sequencing
11 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
Ppa_Contig39: 729859-729970 [-]
intergenic

Mature sequence ppc-miR-2238b

Accession MIMAT0011682
Sequence

66 -  

aaugacaaucgagugggugag

 - 86

Get sequence
Deep sequencing 12 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).