Stem-loop sequence ppc-mir-2236a

Accession MI0011183
Description Pristionchus pacificus miR-2236a stem-loop
Stem-loop 
c        auca   c  a   g          -u     u  uauu 
 gaucgaua    uuc gu ccu agguggauua  ucacu ga    g
 ||||||||    ||| || ||| ||||||||||  ||||| ||     
 cuagcuau    aag cg gga ucuaccuaau  aguga cu    g
-        ---a   c  a   g          uu     -  ucaa
Get sequence
Deep sequencing
5 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
Ppa_Contig154: 421543-421634 [-]
intergenic
Clustered miRNAs
< 10kb from ppc-mir-2236a
ppc-mir-2236b Ppa_Contig154: 421712-421803 [-]
ppc-mir-2236a Ppa_Contig154: 421543-421634 [-]

Mature sequence ppc-miR-2236a

Accession MIMAT0011683
Sequence

19 -  

uaccugagguggauuauucacu

 - 40

Get sequence
Deep sequencing 5 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).