Stem-loop ppc-mir-2236a

Accession

MI0011183

Description

Pristionchus pacificus ppc-mir-2236a precursor miRNA

Sequence

cgaucgauaaucauuccgUACCUGAGGUGGAUUAUUCACUugauauuggaacuucagugauuuaauccaucugaggagccgaaauaucgauc
.((((((((....(((.((.(((.((((((((((.(((((.((..........)))))))..)))))))))).))).)).))).))))))))

Structure

c        auca   c  A   G          -U     u  uauu 
 gaucgaua    uuc gU CCU AGGUGGAUUA  UCACU ga    g
 ||||||||    ||| || ||| ||||||||||  ||||| ||     
 cuagcuau    aag cg gga ucuaccuaau  aguga cu    g
-        ---a   c  a   g          uu     -  ucaa 

Annotation confidence Not enough data

Genome context

ABKE03000093.1: 3220764-3220855 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-2236a

Mature ppc-miR-2236a

• Accession: MIMAT0011683
• Description: Pristionchus pacificus ppc-miR-2236a mature miRNA
• Sequence: 19 - UACCUGAGGUGGAUUAUUCACU - 40
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074