miRBase entry: ppc-mir-2259

Stem-loop ppc-mir-2259


Accession
MI0011185
Description
Pristionchus pacificus ppc-mir-2259 precursor miRNA


Sequence

ggauaauaguugggugcugauccuccgguccaauUGGCAAGAUUAACUAGCUUACUGcugugcauugaauugacagugaguuaguuuuucuagccuacuggcauggaucaaccucauucc
..........((((.(.((((((....(.(((...(((.(((..((((((((((((((.((.......)).).)))))))))))))..))).)))...))))..)))))).)))))....

Structure
ggauaauagu    u c      uccg u   auU   A   UU             - u  gc 
          uggg g ugaucc    g cca   GGC AGA  AACUAGCUUACUG c gu  a
          |||| | ||||||    | |||   ||| |||  ||||||||||||| | ||  u
          acuc c acuagg    c ggu   ccg ucu  uugauugagugac g ua  u
------ccuu    - a      --ua -   cau   a   uu             a u  ag 


Annotation confidence Not enough data
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Genome context
ABKE03000007.1: 743374-743493 [-]

Database links

Mature ppc-miR-2259

Accession MIMAT0011685
Description Pristionchus pacificus ppc-miR-2259 mature miRNA
Sequence 35 - UGGCAAGAUUAACUAGCUUACUG - 57
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074